Cancer-miRNA Regulatory Network

Compendium of miRNA Target Genes

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Lipid Metabolic Process (GO:0006629) Genes Targeted by hsa-mir-590-3p in MPM Mesothelioma Gordon Cluster 56 Table contains all genes in the MPM Mesothelioma Gordon cluster number 56. If a gene harbors a predicted miRNA binding site by one of the three inference methods it is displayed in the final column: M = Weeder-miRvestigator predicted site, P = PITA predicted site and T = TargetScan predicted site. Entrez ID Symbol Description hsa-mir-590-3p GO:0006629 51074 APIP APAF1 interacting protein [Source:HGNC Symbol;Acc:17581] T 23136 EPB41L3 erythrocyte membrane protein band 4.1-like 3 [Source:HGNC Symbol;Acc:3380] P T 94134 ARHGAP12 Rho GTPase activating protein 12 [Source:HGNC Symbol;Acc:16348] T 9445 ITM2B integral membrane protein 2B [Source:HGNC Symbol;Acc:6174] P T 211 ALAS1 aminolevulinate, delta-, synthase 1 [Source:HGNC Symbol;Acc:396] zzz999 567 B2M beta-2-microglobulin [Source:HGNC Symbol;Acc:914] zzz999 3716 JAK1 Janus kinase 1 [Source:HGNC Symbol;Acc:6190] zzz999 64397 ZFP106 zinc finger protein 106 homolog (mouse) [Source:HGNC Symbol;Acc:23240] T 382 ARF6 ADP-ribosylation factor 6 [Source:HGNC Symbol;Acc:659] P T 3516 RBPJ recombination signal binding protein for immunoglobulin kappa J region [Source:HGNC Symbol;Acc:5724] zzz999 58472 SQRDL sulfide quinone reductase-like (yeast) [Source:HGNC Symbol;Acc:20390] zzz999 56647 BCCIP BRCA2 and CDKN1A interacting protein [Source:HGNC Symbol;Acc:978] T 5357 PLS1 plastin 1 [Source:HGNC Symbol;Acc:9090] T 10161 LPAR6 lysophosphatidic acid receptor 6 [Source:HGNC Symbol;Acc:15520] zzz999 2992 GYG1 glycogenin 1 [Source:HGNC Symbol;Acc:4699] zzz999 10577 NPC2 Niemann-Pick disease, type C2 [Source:HGNC Symbol;Acc:14537] zzz999 Yes 7347 UCHL3 ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase) [Source:HGNC Symbol;Acc:12515] zzz999 8673 VAMP8 vesicle-associated membrane protein 8 (endobrevin) [Source:HGNC Symbol;Acc:12647] zzz999 1520 CTSS cathepsin S [Source:HGNC Symbol;Acc:2545] T 9936 CD302 CD302 molecule [Source:HGNC Symbol;Acc:30843] zzz999 204 AK2 adenylate kinase 2 [Source:HGNC Symbol;Acc:362] P T 2517 FUCA1 fucosidase, alpha-L- 1, tissue [Source:HGNC Symbol;Acc:4006] zzz999 96459 FNIP1 folliculin interacting protein 1 [Source:HGNC Symbol;Acc:29418] T 8436 SDPR serum deprivation response [Source:HGNC Symbol;Acc:10690] zzz999 9453 GGPS1 geranylgeranyl diphosphate synthase 1 [Source:HGNC Symbol;Acc:4249] T Yes 2182 ACSL4 acyl-CoA synthetase long-chain family member 4 [Source:HGNC Symbol;Acc:3571] P T Yes 1654 DDX3X DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Source:HGNC Symbol;Acc:2745] P T 3181 HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:HGNC Symbol;Acc:5033] zzz999 3708 ITPR1 inositol 1,4,5-trisphosphate receptor, type 1 [Source:HGNC Symbol;Acc:6180] T 8743 TNFSF10 tumor necrosis factor (ligand) superfamily, member 10 [Source:HGNC Symbol;Acc:11925] T 3032 HADHB hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), beta subunit [Source:HGNC Symbol;Acc:4803] zzz999 Yes 9741 LAPTM4A lysosomal protein transmembrane 4 alpha [Source:HGNC Symbol;Acc:6924] zzz999 80135 RPF1 ribosome production factor 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30350] zzz999 114908 TMEM123 transmembrane protein 123 [Source:HGNC Symbol;Acc:30138] P T 3030 HADHA hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), alpha subunit [Source:HGNC Symbol;Acc:4801] zzz999 Yes 115207 KCTD12 potassium channel tetramerisation domain containing 12 [Source:HGNC Symbol;Acc:14678] P T 2752 GLUL glutamate-ammonia ligase [Source:HGNC Symbol;Acc:4341] T 55754 TMEM30A transmembrane protein 30A [Source:HGNC Symbol;Acc:16667] T 55788 LMBRD1 LMBR1 domain containing 1 [Source:HGNC Symbol;Acc:23038] zzz999 55819 RNF130 ring finger protein 130 [Source:HGNC Symbol;Acc:18280] P T 50856 CLEC4A C-type lectin domain family 4, member A [Source:HGNC Symbol;Acc:13257] T 9475 ROCK2 Rho-associated, coiled-coil containing protein kinase 2 [Source:HGNC Symbol;Acc:10252] T 23228 PLCL2 phospholipase C-like 2 [Source:HGNC Symbol;Acc:9064] zzz999 Yes 1666 DECR1 2,4-dienoyl CoA reductase 1, mitochondrial [Source:HGNC Symbol;Acc:2753] zzz999 Yes 10436 zzz999 zzz999 zzz999 51635 DHRS7 dehydrogenase/reductase (SDR family) member 7 [Source:HGNC Symbol;Acc:21524] zzz999 3122 HLA-DRA major histocompatibility complex, class II, DR alpha [Source:HGNC Symbol;Acc:4947] zzz999 3123 HLA-DRB1 major histocompatibility complex, class II, DR beta 1 [Source:HGNC Symbol;Acc:4948] zzz999 843 CASP10 caspase 10, apoptosis-related cysteine peptidase [Source:HGNC Symbol;Acc:1500] T 23673 STX12 syntaxin 12 [Source:HGNC Symbol;Acc:11430] P T 965 CD58 CD58 molecule [Source:HGNC Symbol;Acc:1688] zzz999 9748 SLK STE20-like kinase [Source:HGNC Symbol;Acc:11088] T 11118 BTN3A2 butyrophilin, subfamily 3, member A2 [Source:HGNC Symbol;Acc:1139] T 301 ANXA1 annexin A1 [Source:HGNC Symbol;Acc:533] zzz999 Yes 51347 TAOK3 TAO kinase 3 [Source:HGNC Symbol;Acc:18133] zzz999 51324 SPG21 spastic paraplegia 21 (autosomal recessive, Mast syndrome) [Source:HGNC Symbol;Acc:20373] zzz999 3988 LIPA lipase A, lysosomal acid, cholesterol esterase [Source:HGNC Symbol;Acc:6617] T Yes 10658 CELF1 CUGBP, Elav-like family member 1 [Source:HGNC Symbol;Acc:2549] zzz999 9978 RBX1 ring-box 1, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:9928] zzz999 11034 DSTN destrin (actin depolymerizing factor) [Source:HGNC Symbol;Acc:15750] zzz999 23167 EFR3A EFR3 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:28970] T 26959 HBP1 HMG-box transcription factor 1 [Source:HGNC Symbol;Acc:23200] P T 1075 CTSC cathepsin C [Source:HGNC Symbol;Acc:2528] T 9528 TMEM59 transmembrane protein 59 [Source:HGNC Symbol;Acc:1239] P T 5048 PAFAH1B1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa) [Source:HGNC Symbol;Acc:8574] T Yes 427 ASAH1 N-acylsphingosine amidohydrolase (acid ceramidase) 1 [Source:HGNC Symbol;Acc:735] T Yes 9861 PSMD6 proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 [Source:HGNC Symbol;Acc:9564] zzz999 5538 PPT1 palmitoyl-protein thioesterase 1 [Source:HGNC Symbol;Acc:9325] zzz999 Yes 9337 CNOT8 CCR4-NOT transcription complex, subunit 8 [Source:HGNC Symbol;Acc:9207] zzz999 51322 WAC WW domain containing adaptor with coiled-coil [Source:HGNC Symbol;Acc:17327] P T 23001 WDFY3 WD repeat and FYVE domain containing 3 [Source:HGNC Symbol;Acc:20751] T 9412 MED21 mediator complex subunit 21 [Source:HGNC Symbol;Acc:11473] T 58488 PCTP phosphatidylcholine transfer protein [Source:HGNC Symbol;Acc:8752] T Yes 5683 PSMA2 proteasome (prosome, macropain) subunit, alpha type, 2 [Source:HGNC Symbol;Acc:9531] P T 6917 TCEA1 transcription elongation factor A (SII), 1 [Source:HGNC Symbol;Acc:11612] P T 79991 OBFC1 oligonucleotide/oligosaccharide-binding fold containing 1 [Source:HGNC Symbol;Acc:26200] zzz999 57826 RAP2C RAP2C, member of RAS oncogene family [Source:HGNC Symbol;Acc:21165] P T 217 ALDH2 aldehyde dehydrogenase 2 family (mitochondrial) [Source:HGNC Symbol;Acc:404] zzz999 50515 CHST11 carbohydrate (chondroitin 4) sulfotransferase 11 [Source:HGNC Symbol;Acc:17422] zzz999 440093 H3F3C H3 histone, family 3C [Source:HGNC Symbol;Acc:33164] T 2230 FDX1 ferredoxin 1 [Source:HGNC Symbol;Acc:3638] T 1528 CYB5A cytochrome b5 type A (microsomal) [Source:HGNC Symbol;Acc:2570] zzz999 57515 SERINC1 serine incorporator 1 [Source:HGNC Symbol;Acc:13464] T Yes 132 ADK adenosine kinase [Source:HGNC Symbol;Acc:257] T 22878 TRAPPC8 trafficking protein particle complex 8 [Source:HGNC Symbol;Acc:29169] P T 3460 IFNGR2 interferon gamma receptor 2 (interferon gamma transducer 1) [Source:HGNC Symbol;Acc:5440] T 3824 KLRD1 killer cell lectin-like receptor subfamily D, member 1 [Source:HGNC Symbol;Acc:6378] T 79073 TMEM109 transmembrane protein 109 [Source:HGNC Symbol;Acc:28771] zzz999 9785 DHX38 DEAH (Asp-Glu-Ala-His) box polypeptide 38 [Source:HGNC Symbol;Acc:17211] zzz999 51719 CAB39 calcium binding protein 39 [Source:HGNC Symbol;Acc:20292] P T Yes 6426 SRSF1 serine/arginine-rich splicing factor 1 [Source:HGNC Symbol;Acc:10780] P T 1432 MAPK14 mitogen-activated protein kinase 14 [Source:HGNC Symbol;Acc:6876] T 3295 HSD17B4 hydroxysteroid (17-beta) dehydrogenase 4 [Source:HGNC Symbol;Acc:5213] T Yes 23412 COMMD3 COMM domain containing 3 [Source:HGNC Symbol;Acc:23332] zzz999 7307 U2AF1 U2 small nuclear RNA auxiliary factor 1 [Source:HGNC Symbol;Acc:12453] P T 8195 MKKS McKusick-Kaufman syndrome [Source:HGNC Symbol;Acc:7108] zzz999 4048 LTA4H leukotriene A4 hydrolase [Source:HGNC Symbol;Acc:6710] zzz999 Yes 2029 ENSA endosulfine alpha [Source:HGNC Symbol;Acc:3360] zzz999 114885 OSBPL11 oxysterol binding protein-like 11 [Source:HGNC Symbol;Acc:16397] T Yes 3074 HEXB hexosaminidase B (beta polypeptide) [Source:HGNC Symbol;Acc:4879] zzz999 Yes 998 CDC42 cell division cycle 42 (GTP binding protein, 25kDa) [Source:HGNC Symbol;Acc:1736] P T 10455 ECI2 enoyl-CoA delta isomerase 2 [Source:HGNC Symbol;Acc:14601] zzz999 Yes 29066 ZC3H7A zinc finger CCCH-type containing 7A [Source:HGNC Symbol;Acc:30959] zzz999 2947 GSTM3 glutathione S-transferase mu 3 (brain) [Source:HGNC Symbol;Acc:4635] T 2665 GDI2 GDP dissociation inhibitor 2 [Source:HGNC Symbol;Acc:4227] P T 440068 CARD17 caspase recruitment domain family, member 17 [Source:HGNC Symbol;Acc:33827] zzz999 4074 M6PR mannose-6-phosphate receptor (cation dependent) [Source:HGNC Symbol;Acc:6752] zzz999 5825 ABCD3 ATP-binding cassette, sub-family D (ALD), member 3 [Source:HGNC Symbol;Acc:67] T 2581 GALC galactosylceramidase [Source:HGNC Symbol;Acc:4115] zzz999 Yes 529 ATP6V1E1 ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1 [Source:HGNC Symbol;Acc:857] zzz999 8031 NCOA4 nuclear receptor coactivator 4 [Source:HGNC Symbol;Acc:7671] T 8678 BECN1 beclin 1, autophagy related [Source:HGNC Symbol;Acc:1034] zzz999 56259 CTNNBL1 catenin, beta like 1 [Source:HGNC Symbol;Acc:15879] zzz999 10284 SAP18 Sin3A-associated protein, 18kDa [Source:HGNC Symbol;Acc:10530] T

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